rs17411033 chr7:107879551 G>A
- Sequence
ttgcagatagcataatgagagaac[G/A]ttgccctcttctgggcagaaggtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM19240 (B cells Lymphoblastoid Cell Lines) HEK293 (embryonic kidney) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -0.33 | 1.06 | 1.03 | n/a | n/a | |||
| CTCF_HUMAN | 0.88 | 0.86 | 1.45 | 0.37 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Cells_Cultured_fibroblasts, Lung, Muscle_Skeletal, Testis, Thyroid