rs17415452 chr15:50145590 G>T
- Sequence
ttggagtgttactgccatctagtg[G/T]aaattttactaaatgtgaataaat
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) GM02610 (Lymphoblastoid Cell Lines) pancreas OCI-LY7 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.94 | 0.19 | 1.34 | -3.94 | Concordant | |||
| STAG1_HUMAN | 0.84 | -0.94 | 1.11 | n/a | n/a |
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Motif analysis
