rs17421051 chr13:23749244 C>T
- Sequence
ttttaaatgtcagcagtactcctg[C/T]tgacagacaggacttattgctcct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) VCaP (prostate carcinoma) MCF7 WS8 cells breast tumor xenograft
- ASB for transcription factors
- FOXA1_HUMAN TLE3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.06 | 2.63 | 2.67 | 4.41 | Concordant | |||
| TLE3_HUMAN | -1.29 | 2.70 | 3.00 | n/a | n/a |
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Motif analysis
