rs17426310 chr4:1712730 C>A

Sequence
agcggcacgtttctcggcctgggt[C/A]gtggcgcatctcccattggttccg
ASB in cell types
HepG2 (hepatoblastoma) monocytes from periferal blood
ASB for transcription factors
RBM25_HUMAN SRBP2_HUMAN CDK8_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN -4.50 1.72 1.001.2·10-4 4.00 n/a n/a
SRBP2_HUMAN 2.53 n/a 0.021.00 3.00 n/a No Hit
CDK8_HUMAN -0.10 1.20 0.980.04 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Hypothalamus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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