rs17426359 chr7:106112636 A>C
- Sequence
gttgggcccgcgccgcgcttccgg[A/C]cccgcgcgactgcgaagagccctg
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) breast tumor primary B-CLL cells
- ASB for transcription factors
- ZN316_HUMAN ANDR_HUMAN GABP1_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN316_HUMAN | 1.96 | n/a | 1.50 | 0.79 | Weak Discordant | |||
| ANDR_HUMAN | 2.64 | -4.80 | 2.00 | n/a | No Hit | |||
| GABP1_HUMAN | -1.66 | 1.55 | 1.25 | n/a | n/a | |||
| ESR1_HUMAN | 2.60 | 0.54 | 2.00 | n/a | No Hit | |||
| BRD4_HUMAN | 1.17 | -0.13 | 2.20 | n/a | n/a |
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Motif analysis
