rs17426673 chr8:100463857 A>G
- Sequence
gctcctatctttctttgtgcagag[A/G]acaccagtgctgcccacgtgccct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN ZN592_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 0.73 | -0.63 | 1.00 | n/a | n/a | |||
| ZN592_HUMAN | 2.49 | -2.22 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, major depressive disorder (broad definition), major depressive disorder (broad definition) (males), transmission distortion