rs17431614 chr9:97922105 T>C
- Sequence
taattcctaacccgcctaacacca[T/C]ctcccatacgctatggcaaggaaa
- ASB in cell types
- spleen MCF7 (Invasive ductal breast carcinoma) HL-60 (acute myeloid leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN CLOCK_HUMAN ATF7_HUMAN INT11_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.27 | 2.27 | 1.32 | n/a | No Hit | |||
| CLOCK_HUMAN | 3.12 | n/a | 2.00 | n/a | No Hit | |||
| ATF7_HUMAN | -0.78 | 0.78 | 1.00 | n/a | No Hit | |||
| INT11_HUMAN | -0.62 | 1.41 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid