rs17435932 chr15:49155815 C>A

Sequence
agcaactaaagctggcaactggga[C/A]atcgtccggtgctgcaggtctcag
ASB in cell types
K562 (myelogenous leukemia) pancreas
ASB for transcription factors
TYY1_HUMAN IRF2_HUMAN CTCF_HUMAN RBM25_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN 0.17 3.45 1.007.2·10-5 1.17 n/a No Hit
IRF2_HUMAN 2.70 -2.57 0.031.00 1.00 n/a No Hit
CTCF_HUMAN 0.79 0.95 0.860.04 1.24 n/a No Hit
RBM25_HUMAN n/a 1.83 1.000.05 1.00 n/a n/a
Items per page:
1 – 4 of 4

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Spleen,  Stomach,  Thyroid,  Whole_Blood

Download