rs17436014 chr4:1712590 C>T
- Sequence
ttgcccccacccgcgggattgagg[C/T]ggccgggccgccgcgggcctctgc
- ASB in cell types
- HepG2 (hepatoblastoma) primary B-CLL cells monocytes from periferal blood brain prefrontal cortex region tissues
- ASB for transcription factors
- RBM25_HUMAN BRD4_HUMAN SRBP2_HUMAN OLIG2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | -2.19 | 2.26 | 4.00 | n/a | n/a | |||
| BRD4_HUMAN | 1.63 | -0.93 | 2.00 | n/a | n/a | |||
| SRBP2_HUMAN | 3.02 | n/a | 3.00 | n/a | No Hit | |||
| OLIG2_HUMAN | -0.47 | 2.35 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood