rs17437980 chr8:55579945 A>G
- Sequence
tagttagcactaaacagctttcca[A/G]cagcaggtggagcattcacctcaa
- ASB in cell types
- neural cell Peyer's patch upper lobe of left lung transverse colon
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.32 | -0.31 | 1.65 | -0.68 | Weak Concordant | |||
| SMC3_HUMAN | 3.50 | -3.78 | 1.50 | n/a | n/a | |||
| RAD21_HUMAN | 1.66 | -0.48 | 1.46 | n/a | n/a |
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Motif analysis
