rs17449560 chr14:31059866 G>C

Sequence
ctttacagcttagtgtgtagaatt[G/C]ctgtaagataaccacctgtctgat
ASB in cell types
HCASMC (Human coronary artery smooth muscle cells) macrophages definitive endoderm from HUES8
ASB for transcription factors
TCF21_HUMAN GATA6_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TCF21_HUMAN 2.46 0.55 4.4·10-81.00 1.92 n/a No Hit
GATA6_HUMAN 1.29 0.76 0.010.90 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi),  cystatin c in serum,  population differentiation markers among great britain
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Muscle_Skeletal,  Thyroid

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