rs174538 chr11:61792609 G>A
- Sequence
ctccgccaccggaagaacacgtcg[G/A]caggagcaggcgcctagcacaacc
- ASB in cell types
- CD14+ monocytes MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- STAT1_HUMAN GABPA_HUMAN KLF8_HUMAN ZBT11_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.37 | 1.60 | 1.67 | n/a | No Hit | |||
| GABPA_HUMAN | 0.94 | 1.40 | 1.29 | n/a | No Hit | |||
| KLF8_HUMAN | -2.02 | 2.46 | 1.00 | n/a | No Hit | |||
| ZBT11_HUMAN | 0.71 | -0.71 | 1.00 | n/a | n/a | |||
| CDN1B_HUMAN | 0.09 | 1.12 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
EMBL-EBI blood metabolite levels, plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid), trans fatty acid levels
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, alkaline phosphatase (alp) in plasma, birth weight, c11orf10 gene expression in adipose tissue, c11orf10 gene expression in peripheral blood leucocytes, diastolic blood pressure (dbp), fasting blood glucose, hdl cholesterol, hdl cholesterol change with statins, height, homa-b, ldl cholesterol, ldl cholesterol change with statins, obesity with early age of onset (age >2), plasma alpha-linolenic acid levels, plasma docosahexaenoic acid levels, plasma docosapentaenoic acid levels, plasma eicosapentaenoic acid levels, plasma oleic acid, plasma palmitoleic acid, plasma stearic acid, rheumatoid arthritis, rr interval, total cholesterol, total cholesterol change with statins, triglycerides, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood