rs17456987 chr9:129290732 G>C

Sequence
tagggctggcctttgagcacctga[G/C]tagcaggtgcatggttgagattcg
ASB in cell types
keratinocytes
ASB for transcription factors
SNAI2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SNAI2_HUMAN -4.49 3.38 1.008.4·10-7 1.50 3.41 Concordant
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Motif analysis

SNAI2_HUMAN Concordant
SNAI2_HUMAN pic

Genetic associations

GRASP adiponectin levels,  hdl cholesterol,  ldl cholesterol,  total cholesterol,  triglycerides
GTEx eQTL Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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