rs17462248 chr8:29513490 T>G
- Sequence
tgcataatcttctggattgcatat[T/G]tgttcttatcactcaccggcttta
- ASB in cell types
- HeLa S3 (cervical adenocarcinoma) MCF7 (Invasive ductal breast carcinoma) HCASMC (Human coronary artery smooth muscle cells) hTERT-HME1(Telomerase immortalized cell line)
- ASB for transcription factors
- CEBPB_HUMAN TCF21_HUMAN ZN143_HUMAN BRCA2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 2.65 | 1.44 | 1.72 | -0.70 | Weak Concordant | |||
| TCF21_HUMAN | 1.38 | n/a | 3.00 | 3.46 | Discordant | |||
| ZN143_HUMAN | 2.67 | n/a | 2.00 | n/a | No Hit | |||
| BRCA2_HUMAN | 2.08 | -0.11 | 1.00 | n/a | n/a | |||
| TF65_HUMAN | 1.69 | -0.59 | 2.25 | n/a | No Hit |
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Motif analysis
