rs174680 chr22:19947476 T>C
- Sequence
gggggcagggtaaggagtgtgagc[T/C]atctccagtgacaggtaaggtcac
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- PKNX1_HUMAN ARI1B_HUMAN REST_HUMAN NR2C1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 1.70 | n/a | 4.00 | n/a | No Hit | |||
| ARI1B_HUMAN | 1.41 | n/a | 4.00 | n/a | n/a | |||
| REST_HUMAN | 1.72 | n/a | 4.00 | 1.63 | Weak Discordant | |||
| NR2C1_HUMAN | 2.13 | n/a | 4.00 | n/a | No Hit | |||
| NFAC3_HUMAN | 2.13 | n/a | 4.00 | n/a | No Hit |
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Motif analysis
