rs174761 chr22:29306149 T>C

Sequence
ccttcacagaggtgacacaccagt[T/C]cattcaggtcaagggcgcagagca
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) MCF10A (breast epithelial cells)
ASB for transcription factors
NCOA3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NCOA3_HUMAN 3.14 -3.48 9.8·10-31.00 1.00 n/a n/a
Items per page:
1 – 1 of 1

Motif analysis

No data available

Genetic associations

GRASP asthma,  birth weight,  college completion,  height,  ldl cholesterol,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

Download