rs17477878 chr1:167600526 C>G

Sequence
ggatagaactagtgtattaaaaca[C/G]cagctttggagactgactgagaat
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
REQU_HUMAN MEIS2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
REQU_HUMAN n/a 2.74 1.002.5·10-3 3.00 n/a n/a
MEIS2_HUMAN n/a 2.27 1.000.02 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Breast_Mammary_Tissue,  Lung,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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