rs17490500 chr10:69447074 A>C
- Sequence
ctaaatctcactgtcaagttatca[A/C]gaaaacagatctcaggacggattc
- ASB in cell types
- K562 (myelogenous leukemia) TTC-1240 (Rhabdoid tumor of the kidney)
- ASB for transcription factors
- REQU_HUMAN ATF3_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REQU_HUMAN | -0.11 | 1.58 | 1.00 | n/a | n/a | |||
| ATF3_HUMAN | -1.02 | 1.79 | 1.00 | 1.01 | Weak Concordant | |||
| KDM1A_HUMAN | -0.72 | 2.29 | 1.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GRASP childhood acute lymphoblastic leukemia, college completion, fasting blood glucose, total cholesterol, years of education
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood