rs17494984 chr20:57495294 G>T
- Sequence
ccttgccaaggaaaaaatgttctc[G/T]ttctgtatcgcggaattaataaaa
- ASB in cell types
- pancreas foreskin keratinocyte GBM39 (Human brain tumor)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.82 | 0.51 | 1.44 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP barnes akathisia rating scale, bipolar disorder, ldl cholesterol, major depressive disorder, parkinsons disease, total cholesterol, triglycerides
GTEx eQTL Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Prostate, Spleen, Testis, Thyroid