rs175102 chr11:61043285 G>A

Sequence
cagggtggtttccagtttggggct[G/A]ttaacgagcagtgctgacgtgagc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
NFAC3_HUMAN ELF1_HUMAN IKZF1_HUMAN MEF2B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NFAC3_HUMAN 3.89 -3.77 1.9·10-71.00 1.00 n/a No Hit
ELF1_HUMAN 3.29 -3.02 2.9·10-51.00 1.00 n/a No Hit
IKZF1_HUMAN 2.74 -4.43 4.9·10-51.00 1.75 n/a n/a
MEF2B_HUMAN 2.49 -4.44 7.5·10-31.00 1.50 0.18 Weak Discordant
ARNT_HUMAN 3.16 n/a 7.7·10-31.00 2.00 n/a No Hit
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Motif analysis

MEF2B_HUMAN Weak Discordant
MEF2B_HUMAN pic

Genetic associations

GRASP abnormal involuntary movement scale,  asthma,  homa-b,  irritible bowel syndrome,  schizophrenia
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus

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