rs17523802 chr1:7961680 G>A
- Sequence
agtctgcgcagtgtggggctgagg[G/A]aggccggacggcgcgcgtgcgtgc
- ASB in cell types
- CD14+ monocytes LNCaP C4-2B (prostate carcinoma) foreskin keratinocyte 22RV1 (prostate carcinoma)
- ASB for transcription factors
- STAT1_HUMAN ANDR_HUMAN TBP_HUMAN BRD2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.76 | 1.44 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.44 | 0.11 | 1.79 | n/a | No Hit | |||
| TBP_HUMAN | 0.55 | 1.30 | 1.00 | n/a | No Hit | |||
| BRD2_HUMAN | 0.22 | 1.31 | 2.22 | n/a | n/a | |||
| CTCF_HUMAN | 0.89 | 0.22 | 1.40 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood