rs17577 chr20:46014472 G>A

Sequence
acacgcacgacgtcttccagtacc[G/A]aggtgagggctgaggaggatccct
ASB in cell types
MCF7L-P(immortalized breast epithelial cell line) MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
GABPA_HUMAN CTCF_HUMAN ZN444_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABPA_HUMAN n/a 2.19 1.000.03 1.00 n/a No Hit
CTCF_HUMAN 0.65 1.13 0.950.03 1.07 n/a No Hit
ZN444_HUMAN -2.45 2.39 1.000.04 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP acute lung injury following major trauma,  hdl cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Thyroid,  Uterus,  Whole_Blood

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