rs1762929 chr1:16613699 G>A
- Sequence
aggttaggggccgcgcaggcggag[G/A]aaaggagtaacccaggggaaggac
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN NELFE_HUMAN ZFX_HUMAN ZBT40_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.73 | 2.07 | 2.23 | n/a | No Hit | |||
| NELFE_HUMAN | -0.44 | 1.66 | 2.15 | n/a | n/a | |||
| ZFX_HUMAN | 0.28 | 1.24 | 2.07 | n/a | No Hit | |||
| ZBT40_HUMAN | 0.70 | 2.50 | 1.42 | n/a | No Hit | |||
| KMT2A_HUMAN | 0.61 | 2.65 | 1.75 | -2.49 | Discordant |
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Motif analysis
