rs1776181 chr1:241847942 A>G
- Sequence
ccagcagccccggcgggtgtaaac[A/G]ctcccaacttccgaggcggtgctc
- ASB in cell types
- LNCaP (prostate carcinoma) HEK293 (embryonic kidney) HepG2 (hepatoblastoma) adult erythroblasts
- ASB for transcription factors
- FOXA1_HUMAN FOXK2_HUMAN FOXA2_HUMAN GABPA_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 2.37 | -0.01 | 1.77 | -3.19 | Concordant | |||
| FOXK2_HUMAN | 1.87 | 1.19 | 2.80 | -5.91 | Concordant | |||
| FOXA2_HUMAN | 2.61 | 0.56 | 1.20 | -4.06 | Concordant | |||
| GABPA_HUMAN | 0.99 | 0.43 | 1.67 | n/a | No Hit | |||
| ZNF18_HUMAN | n/a | 1.82 | 4.00 | n/a | No Hit |
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Motif analysis
