rs178620 chr11:112795334 G>A
- Sequence
tttcctgagaagttttaatgtggc[G/A]gggtaagtgtatgtctcagtctca
- ASB in cell types
- thoracic aorta GM10847 (female B-cells Lymphoblastoid Cell Lines) GM19193 (female B-cells Lymphoblastoid Cell Lines) GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMC1A_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.55 | 1.43 | 1.31 | n/a | No Hit | |||
| STAG1_HUMAN | 0.52 | 1.61 | 1.00 | n/a | n/a | |||
| SMC1A_HUMAN | -0.06 | 1.74 | 1.86 | n/a | n/a |
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