rs1789109 chr18:77147522 G>T
- Sequence
tgttctgaacgtatgctagacggc[G/T]ctggtttgcagagccacacctgga
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.20 | n/a | 1.33 | -2.85 | Concordant |
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Motif analysis
