rs1789973 chr8:106456190 C>T

Sequence
aagcactcagagagatgtgagtca[C/T]cataggtcacccagaggatgaaga
ASB in cell types
HCASMC (Human coronary artery smooth muscle cells) TTC-1240 (Rhabdoid tumor of the kidney)

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
HCASMC (Human coronary artery smooth muscle cells) n/a 0.69 1.005.4·10-4 1.33
TTC-1240 (Rhabdoid tumor of the kidney) 0.72 1.07 0.810.02 1.00
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  partial epilepsy,  variant creutzfeldt-jakob disease
GTEx eQTL Brain_Spinal_cord_cervical_c-1,  Esophagus_Mucosa,  Nerve_Tibial

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