rs1793137 chr11:118145353 C>T

Sequence
gtctctatcaccctcagtgccaac[C/T]tcgggaggatggctgtctactcca
ASB in cell types
T47D (invasive ductal carcinoma) foreskin keratinocyte
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.43 0.75 1.002.5·10-3 1.39 2.74 Concordant
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy)
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cortex,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Substantia_nigra,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Lung,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Spleen,  Testis

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