rs1793395 chr11:75583288 A>G

Sequence
tctagcggcccaaagcgggtaggc[A/G]gagcgcagataccggggcctcttt
ASB in cell types
pancreas gastroesophageal sphincter HEK293 (embryonic kidney) tibial nerve
ASB for transcription factors
CTCF_HUMAN ZN579_HUMAN CHD8_HUMAN NFIC_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.96 0.97 2.8·10-681.00 1.26 n/a No Hit
ZN579_HUMAN n/a 2.67 1.009.7·10-4 2.00 n/a n/a
CHD8_HUMAN 1.78 -0.81 0.011.00 1.00 n/a n/a
NFIC_HUMAN -1.94 2.89 1.000.02 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Kidney_Cortex,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Prostate,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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