rs1794442 chr4:3515015 A>G
- Sequence
ccgggtgaactgcaaggacgccaa[A/G]ggacggcgccatacccggggcagg
- ASB in cell types
- heart left ventricle GM19239 (male B-cells lymphoblastoid cell line) LNCaP (prostate carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| heart left ventricle | 2.14 | -0.47 | 1.00 | |||
| GM19239 (male B-cells lymphoblastoid cell line) | -1.54 | 2.12 | 1.00 | |||
| LNCaP (prostate carcinoma) | 1.54 | -0.91 | 1.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood