rs1797517 chr12:9888765 G>A

Sequence
atggatttctcccagaatgtaaac[G/A]tcagcagtctatcaggtaatactc
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -1.70 2.04 1.001.0·10-4 3.75 6.29 Concordant
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Motif analysis

FOXA1_HUMAN Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP autism,  comorbid depressive syndrome and alcohol dependence,  infant head circumference,  irritible bowel syndrome,  maternal imprinting effects on cleft palate,  primary rhegmatogenous retinal detachment
GTEx eQTL Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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