rs1799525 chr12:121352124 C>A

Sequence
gctgcacgagcaggagccagcggg[C/A]gcctctcacctgcagcaggggcag
ASB in cell types
MDA-MB-231 (breast adenocarcinoma) GM19239 (male B-cells lymphoblastoid cell line)
ASB for transcription factors
CTCF_HUMAN BRD2_HUMAN BRD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.28 0.40 2.2·10-41.00 1.44 n/a No Hit
BRD2_HUMAN 0.77 -0.13 0.030.99 1.07 n/a n/a
BRD4_HUMAN 0.83 0.41 0.050.94 1.47 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP diastolic blood pressure (dbp),  fasting insulin,  homa-ir
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Whole_Blood

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