rs1799722 chr14:96204802 C>T
- Sequence
gtgcccaggaggctgatgacatca[C/T]tacccagcccttgaaagatgagct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ATF7_HUMAN PKNX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF7_HUMAN | -0.12 | 2.31 | 1.50 | 1.42 | Weak Concordant | |||
| PKNX1_HUMAN | -1.79 | 2.16 | 1.00 | n/a | No Hit |
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Motif analysis
