rs1799797 chr16:13920136 T>A
- Sequence
cactaggagtcggcttccttcggc[T/A]gcgttcggctgcgacccggaagag
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) HEK293 (embryonic kidney) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- GABPA_HUMAN SPT5H_HUMAN BRD4_HUMAN EMSY_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | -0.33 | 1.16 | 2.28 | n/a | No Hit | |||
| SPT5H_HUMAN | -0.06 | 1.39 | 1.20 | n/a | n/a | |||
| BRD4_HUMAN | 1.55 | 0.34 | 3.00 | n/a | n/a | |||
| EMSY_HUMAN | n/a | 1.42 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.74 | 0.57 | 1.17 | n/a | No Hit |
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