rs1799872 chr12:52901610 T>C
- Sequence
atctctcccgtctcaggtttacca[T/C]gtcaacattgacacataatttgtt
- ASB in cell types
- breast tumor xenograft embryonic stem cell-derived pancreatic cells
- ASB for transcription factors
- FOXA1_HUMAN SMAD4_HUMAN PRGR_HUMAN FOXA2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 3.06 | -0.32 | 1.00 | -2.11 | Concordant | |||
| SMAD4_HUMAN | 2.63 | n/a | 1.50 | n/a | No Hit | |||
| PRGR_HUMAN | 1.43 | -0.62 | 1.30 | n/a | No Hit | |||
| FOXA2_HUMAN | 1.63 | -0.19 | 1.12 | -1.53 | Weak Concordant |
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Motif analysis
