rs1799915 chr17:40820464 C>T
- Sequence
aagatttattggctacacgaggac[C/T]ataatgaactctcttttggctggg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- HINFP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HINFP_HUMAN | 2.74 | -5.07 | 2.00 | -1.35 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Anterior_cingulate_cortex_BA24, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Colon_Transverse, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid