rs1800012 chr17:50200388 C>A
- Sequence
ggaggtccagccctcatcccgccc[C/A]cattccctgggcaggtggggtggc
- ASB in cell types
- 22RV1 (prostate carcinoma) foreskin keratinocyte
- ASB for transcription factors
- ANDR_HUMAN STAG1_HUMAN CTCF_HUMAN PATZ1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.26 | -0.31 | 1.83 | n/a | No Hit | |||
| STAG1_HUMAN | -0.83 | 1.31 | 1.11 | n/a | n/a | |||
| CTCF_HUMAN | 0.92 | 0.70 | 1.40 | n/a | No Hit | |||
| PATZ1_HUMAN | 1.58 | -2.63 | 1.50 | -3.54 | Concordant |
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Motif analysis
