rs1800686 chr20:46117764 G>A

Sequence
gaagttgagacgacgcgcccacac[G/A]agggaatttcctttgaaagagagc
ASB in cell types
HUVEC-C (HUVEC, umbilical vein endothelial cells)
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
HUVEC-C (HUVEC, umbilical vein endothelial cells) 2.50 n/a 8.3·10-41.00 2.50
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  rheumatoid arthritis,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach

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