rs1800734 chr3:36993455 G>A
- Sequence
ggctggatggcgtaagctacagct[G/A]aaggaagaacgtgagcacgaggca
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) breast tumor upper lobe of left lung
- ASB for transcription factors
- TYY1_HUMAN BHE40_HUMAN ZBT40_HUMAN SRBP2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.13 | 1.28 | 1.15 | n/a | No Hit | |||
| BHE40_HUMAN | 0.74 | n/a | 1.33 | n/a | No Hit | |||
| ZBT40_HUMAN | 1.09 | -1.09 | 1.00 | n/a | No Hit | |||
| SRBP2_HUMAN | 1.28 | 0.42 | 2.75 | n/a | No Hit | |||
| ESR1_HUMAN | 2.79 | 0.13 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP arthritis including non-rheumatoid, bipolar disorder, college completion, salmonella-induced pyroptosis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood