rs1800797 chr7:22726602 A>G

Sequence
gaagtaactgcacgaaatttgagg[A/G]tggccaggcagttctacaacagcc
ASB in cell types
A549 (lung carcinoma) K562 (myelogenous leukemia) U87 (glioblastoma)
ASB for transcription factors
SMC3_HUMAN BRD4_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMC3_HUMAN 1.55 0.49 0.020.78 1.94 n/a n/a
BRD4_HUMAN 1.94 -1.68 0.021.00 1.00 n/a n/a
RAD21_HUMAN 1.07 0.69 0.020.60 1.59 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI systemic lupus erythematosus
GRASP adiponectin levels,  hdl cholesterol,  systolic blood pressure (sbp),  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Amygdala,  Brain_Hypothalamus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Minor_Salivary_Gland,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Stomach,  Testis,  Thyroid,  Uterus,  Vagina,  Whole_Blood

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