rs1800871 chr1:206773289 A>G

Sequence
gtgagcaaactgaggcacagagat[A/G]ttacatcacctgtacaagggtaca
ASB in cell types
MS-1 (Small cell lung carcinoma) GM02610 (Lymphoblastoid Cell Lines)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN -2.69 2.67 1.008.0·10-6 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI behcets disease,  gut microbiota (functional units),  mouth ulcers
GRASP behcets disease,  behets disease,  ldl cholesterol change with statins,  triglycerides,  ulcerative colitis
Finemapping behcets disease
GTEx eQTL Whole_Blood

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