rs1802059 chr5:7897206 G>A
- Sequence
ccagcttcatggccagcaggtggc[G/A]agaatcctcctccaggagaacggc
- ASB in cell types
- K562 (myelogenous leukemia) GM19238 (female B-cells lymphoblastoid cell lines) MCF7 (Invasive ductal breast carcinoma) GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN TYY1_HUMAN EGR1_HUMAN JUND_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.61 | -0.01 | 2.13 | -1.46 | Weak Concordant | |||
| TYY1_HUMAN | 2.49 | -2.03 | 1.00 | n/a | No Hit | |||
| EGR1_HUMAN | 2.14 | n/a | 1.00 | n/a | No Hit | |||
| JUND_HUMAN | 2.64 | -4.38 | 1.67 | n/a | No Hit | |||
| ARI1B_HUMAN | 2.69 | -2.48 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP comorbid depressive syndrome and alcohol dependence, mitral annular calcium, prop taste detection threshold, total cholesterol