rs1805082 chr18:23540480 T>C
- Sequence
tcgaaagagactgatccaatccaa[T/C]atctactttgttcaggactgcgat
- ASB in cell types
- K562 (myelogenous leukemia) macrophages form periferal blood
- ASB for transcription factors
- ARI1B_HUMAN MEIS2_HUMAN MTG16_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | 3.46 | -3.12 | 1.00 | n/a | n/a | |||
| MEIS2_HUMAN | 3.06 | -5.13 | 1.50 | n/a | No Hit | |||
| MTG16_HUMAN | 2.56 | -2.14 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), childhood acute lymphoblastic leukemia, college completion, diastolic blood pressure (dbp), fasting blood glucose, hdl cholesterol, height, ldl cholesterol, mitral annular calcium, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood