rs1806269 chr17:5419908 C>A

Sequence
cataatggtggtgctgctggaaat[C/A]tagcacctggggagagcctgagac
ASB in cell types
HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
TCF21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TCF21_HUMAN 2.62 n/a 1.0·10-41.00 2.50 1.50 Weak Discordant
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Motif analysis

TCF21_HUMAN Weak Discordant
TCF21_HUMAN pic

Genetic associations

GRASP barnes akathisia rating scale,  hdl cholesterol,  insulinogenic index,  paternal transmission distortion,  urinary albumin-to-creatinine ratio,  years of education
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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