rs1806462 chr3:128487775 C>A

Sequence
gtgaaggagttccggcgggagccc[C/A]gagggcgacgggcccagggacagc
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney)
ASB for transcription factors
P53_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
P53_HUMAN 2.81 -2.61 0.051.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  ldl cholesterol,  systolic blood pressure (sbp),  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Spleen,  Thyroid

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