rs1807664 chr22:35043426 T>G
- Sequence
gcagcctggagccttagccactgg[T/G]tgacgctgccatcagcctccacaa
- ASB in cell types
- GM12890 (Lymphoblastoid Cell Lines) LNCaP (prostate carcinoma) HUES64 (embryonic stem cells) transverse colon
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.05 | 0.38 | 2.00 | 3.33 | Discordant | |||
| STAG1_HUMAN | 2.00 | 0.49 | 3.38 | n/a | n/a | |||
| RAD21_HUMAN | 2.87 | -0.53 | 1.21 | n/a | n/a |
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Motif analysis
