rs1809420 chr15:78764427 T>C

Sequence
tcccaagagattcagaatccggtg[T/C]gatcgggcacacagatgtgcagcc
ASB in cell types
HEK293T (embryonic kidney)
ASB for transcription factors
ZFX_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZFX_HUMAN 2.04 -2.38 0.041.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI bmi in smokers,  body mass index (joint analysis main effects and smoking interaction)
GRASP advanced age-related macular degeneration,  advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  advanced age-related macular degeneration (geographic atrophy),  body mass index (bmi),  ldl cholesterol,  nicotine dependence (smoking), cigarettes per day,  transmission distortion,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Testis

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