rs1810246 chr15:90294489 T>C

Sequence
cccttatgttcttggtttccccgc[T/C]ttctgatttctgtggactttcact
ASB for transcription factors
PRDM9_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PRDM9_HUMAN 2.83 -2.82 5.5·10-31.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  aortic valve calcium,  homa-b,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Brain_Hippocampus,  Brain_Hypothalamus,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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