rs1810500 chr20:50441106 A>G

Sequence
tttctgctcatcttgtgcctggct[A/G]gtgacctttaattaggtgctgtca
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney) PC3(bone mets prostate adenocarcinoma)
ASB for transcription factors
ESR1_HUMAN SP7_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 1.82 -3.93 0.031.00 2.75 n/a No Hit
SP7_HUMAN 2.71 -1.91 0.051.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Spinal_cord_cervical_c-1,  Testis

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