rs1810501 chr20:50440997 T>C
- Sequence
ggagtccgcctatcatgcttgtca[T/C]ccagccttccaggcttgcgtggag
- ASB in cell types
- HASM2 (Human airway smooth muscle 2) MCF7 (Invasive ductal breast carcinoma) HCASMC (Human coronary artery smooth muscle cells) HS-ES-2M (Epithelioid sarcoma)
- ASB for transcription factors
- GCR_HUMAN ESR1_HUMAN ERR1_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.90 | -0.62 | 1.11 | n/a | No Hit | |||
| ESR1_HUMAN | 2.32 | n/a | 1.83 | 0.89 | Weak Discordant | |||
| ERR1_HUMAN | 2.56 | -2.85 | 2.00 | n/a | No Hit | |||
| BRD4_HUMAN | 2.04 | -0.35 | 1.50 | n/a | n/a | |||
| SMRC1_HUMAN | 2.33 | -0.16 | 1.25 | n/a | n/a |
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Motif analysis
